1. SSP (Mirror 1; Mirror 2): A genome-wide analysis of sumoylation-related biological processes and functions in human nucleus. Totally 2,683 potential SUMO substrates conserved in both human and mouse were identified. And we design a simple query software to search the results.

2. SUMOsp: Highly accurate software for prediction of sumoylation site.

3. GPS: one of our recent projects. We designed a novel algorithm GPS (Group-based Phosphorylation sites Prediction) and construct an easy-to-use web server for the experimentalists.

4. PPSP: Prediction of PK-Specific Phosphorylation site. The software has been implemented in Bayesian Decision Theory (BDT) algorithm.

5. MeMo: The first computational program for prediction of protein methylation site on either lysine or arginine residues.